Kiyoko F. Aoki-Kinoshita
Bioinformatics Education Program     [ English | Japanese ]


Kiyoko F. Aoki-Kinoshita

Soka University - Faculty of Engineering -
Department of Bioinformatics - -
(Laboratory in the Graduate School of Engineering)
Assistant Professor
Ph.D. Computer Engineering
http://www.t.soka.ac.jp/cgi-bin/staffs.cgi?target=Lif&file_name=kkiyoko〈=english&path1=&path2=
E-mail: kkiyoko@t.soka.ac.jp
Academic career
    June, 1996 - Both BS and MS degrees in Computer Science from Northwestern University, USA
    Dec., 1999 - PhD in Computer Engineering from Northwestern University, USA
    Jan., 2000 - Postdoctoral fellow at Institute for Information Science, Academia Sinica, Taiwan
    May, 2000 - Senior software engineer at BioDiscovery, Inc., in Los Angeles, California, USA
    Apr., 2003 - Postdoctoral fellow at Bioinformatics Center, Institute for Chemical Research, Kyoto University
    Apr., 2004 - Research Associate/Assistant Professor at Bioinformatics Center, Institute for Chemical Research, Kyoto University
    Apr., 2006 - Assistant Professor (Kinoshita Laboratory) in Department of Bioinformatics, Faculty of Engineering, Soka University
Research field
    Systems programming for knowledge discovery, Glycoinformatics, Algorithm development, Distributed systems and mobile agents.
Current research
  1. Glycome informatics
  2. Chemo-informatics
Selected publications
  1. Kanehisa M, Goto S, Hattori M, Aoki-Kinoshita KF, Itoh M, Kawashima S, Katayama T, Araki M, Hirakawa M., From genomics to chemical genomics: new developments in KEGG.  [pubmed]
  2. Hashimoto, K., Goto, S., Kawano, S., Aoki-Kinoshita, K.F., Ueda, N., Hamajima, M., Kawasaki, T., and Kanehisa, M., KEGG as a glycome informatics resource, Glycobiology, in press, July 2005.
  3. Ueda, N., Aoki-Kinoshita, K. F., Yamaguchi, A., Akutsu, T., and Mamitsuka, H., A probabilistic model for mining labeled ordered trees: capturing patterns in carbohydrate sugar chains, IEEE Transactions on Knowledge and Data Engineering, 17(8), 1051-1064, Aug 2005.
  4. Aoki, K. F., Mamitsuka, H., Akutsu, T., and Kanehisa, M., A score matrix to reveal the hidden links in glycans, Bioinformatics, 21(8), 1457-1463, Apr 2005.  [pubmed]
  5. Aoki, K. F., Yamaguchi, A., Ueda, N., Akutsu, T., Mamitsuka, H., Goto, S. and Kanehisa, M., KCaM (KEGG Carbohydrate Matcher): A Software Tool for Analyzing the Structures of Carbohydrate Sugar Chains, Nucleic Acids Research, Special Web Server Edition, 32, W267-W272, 2004.  [pubmed]
  6. Ueda, N., Aoki, K. F. and Mamitsuka, H., A General Probabilistic Framework for Mining Labeled Ordered Trees Proceedings of the Fourth SIAM International Conference on Data Mining (SDM 2004), 357-368, Orlando, FL, April, 2004.
  7. Aoki, K. F., Ueda, N., Yamaguchi, A., Kanehisa M., Akutsu, T. and Mamitsuka, H., Application of a New Probabilistic Model for Recognizing Complex Patterns in Glycans, Proceedings of the Twelfth International Conference on Intelligent Systems for Molecular Biology (Supplement of Bioinformatics), 2004.
  8. Aoki, K. F., Ueda, N., Yamaguchi, A., Akutsu, T., Kanehisa, M. and Mamitsuka, H., Managing and Analyzing Carbohydrate Data, ACM SIGMOD Record, 33(2), 2004.
  9. Aoki, K. F., Yamaguchi, A., Okuno, Y., Akutsu, T., Ueda, N., Kanehisa, M. and Mamitsuka, H., Efficient Tree-Matching Methods for Accurate Carbohydrate Database Queries, Genome Informatics, 14, 134-143, 2003.

Update: April 12, 2006